Tuesday 20 August 2013

The ISME Journal - Table of Contents alert Volume 7 Issue 9

The ISME Journal
TABLE OF CONTENTS

Volume 7, Issue 9 (September 2013)

In this issue
Original Articles
Corrigenda

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Original Articles

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MICROBIAL POPULATION AND COMMUNITY ECOLOGY

Global marine bacterial diversity peaks at high latitudes in winter Open

Joshua Ladau, Thomas J Sharpton, Mariel M Finucane, Guillaume Jospin, Steven W Kembel, James O'Dwyer, Alexander F Koeppel, Jessica L Green and Katherine S Pollard

ISME J 2013 7: 1669-1677; advance online publication, March 21, 2013; 10.1038/ismej.2013.37

Abstract | Full Text

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes Open

Pascal Hingamp, Nigel Grimsley, Silvia G Acinas, Camille Clerissi, Lucie Subirana, Julie Poulain, Isabel Ferrera, Hugo Sarmento, Emilie Villar, Gipsi Lima-Mendez, Karoline Faust, Shinichi Sunagawa, Jean-Michel Claverie, Hervé Moreau, Yves Desdevises, Peer Bork, Jeroen Raes, Colomban de Vargas, Eric Karsenti, Stefanie Kandels-Lewis, Olivier Jaillon, Fabrice Not, Stéphane Pesant, Patrick Wincker and Hiroyuki Ogata

ISME J 2013 7: 1678-1695; advance online publication, April 11, 2013; 10.1038/ismej.2013.59

Abstract | Full Text

Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi

Otso Ovaskainen, Dmitry Schigel, Heini Ali-Kovero, Petri Auvinen, Lars Paulin, Björn Nordén and Jenni Nordén

ISME J 2013 7: 1696-1709; advance online publication, April 11, 2013; 10.1038/ismej.2013.61

Abstract | Full Text

Association between living environment and human oral viral ecology

Refugio Robles-Sikisaka, Melissa Ly, Tobias Boehm, Mayuri Naidu, Julia Salzman and David T Pride

ISME J 2013 7: 1710-1724; advance online publication, April 18, 2013; 10.1038/ismej.2013.63

Abstract | Full Text

Oxygen-dependent niche formation of a pyrite-dependent acidophilic consortium built by archaea and bacteria

Sibylle Ziegler, Kerstin Dolch, Katharina Geiger, Susanne Krause, Maximilian Asskamp, Karin Eusterhues, Michael Kriews, Dorothee Wilhelms-Dick, Joerg Goettlicher, Juraj Majzlan and Johannes Gescher

ISME J 2013 7: 1725-1737; advance online publication, April 25, 2013; 10.1038/ismej.2013.64

Abstract | Full Text

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

Jennifer R Brum, Ryan O Schenck and Matthew B Sullivan

ISME J 2013 7: 1738-1751; advance online publication, May 2, 2013; 10.1038/ismej.2013.67

Abstract | Full Text

EVOLUTIONARY GENETICS

Combined effect of loss of the caa3 oxidase and Crp regulation drives Shewanella to thrive in redox-stratified environments

Guangqi Zhou, Jianhua Yin, Haijiang Chen, Yijie Hua, Linlin Sun and Haichun Gao

ISME J 2013 7: 1752-1763; advance online publication, April 11, 2013; 10.1038/ismej.2013.62

Abstract | Full Text

Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity Open

Adam Monier, Sebastian Sudek, Naomi M Fast and Alexandra Z Worden

ISME J 2013 7: 1764-1774; advance online publication, May 2, 2013; 10.1038/ismej.2013.70

Abstract | Full Text

INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

Christian G Klatt, Zhenfeng Liu, Marcus Ludwig, Michael Kühl, Sheila I Jensen, Donald A Bryant and David M Ward

ISME J 2013 7: 1775-1789; advance online publication, April 11, 2013; 10.1038/ismej.2013.52

Abstract | Full Text

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution

Aifen Zhou, Edward Baidoo, Zhili He, Aindrila Mukhopadhyay, Jason K Baumohl, Peter Benke, Marcin P Joachimiak, Ming Xie, Rong Song, Adam P Arkin, Terry C Hazen, Jay D Keasling, Judy D Wall, David A Stahl and Jizhong Zhou

ISME J 2013 7: 1790-1802; advance online publication, April 11, 2013; 10.1038/ismej.2013.60

Abstract | Full Text

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

Jantiya Isanapong, W Sealy Hambright, Austin G Willis, Atcha Boonmee, Stephen J Callister, Kristin E Burnum, Ljiljana Paša-Tolić, Carrie D Nicora, John T Wertz, Thomas M Schmidt and Jorge LM Rodrigues

ISME J 2013 7: 1803-1813; advance online publication, May 9, 2013; 10.1038/ismej.2013.74

Abstract | Full Text

MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS

The dynamic bacterial communities of a melting High Arctic glacier snowpack

Katherina Hell, Arwyn Edwards, Jakub Zarsky, Sabine M Podmirseg, Susan Girdwood, Justin A Pachebat, Heribert Insam and Birgit Sattler

ISME J 2013 7: 1814-1826; advance online publication, April 4, 2013; 10.1038/ismej.2013.51

Abstract | Full Text

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

Libusha Kelly, Huiming Ding, Katherine H Huang, Marcia S Osburne and Sallie W Chisholm

ISME J 2013 7: 1827-1841; advance online publication, May 9, 2013; 10.1038/ismej.2013.58

Abstract | Full Text

Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges

Jason N Woodhouse, Lu Fan, Mark V Brown, Torsten Thomas and Brett A Neilan

ISME J 2013 7: 1842-1851; advance online publication, April 18, 2013; 10.1038/ismej.2013.65

Abstract | Full Text

Strong coupling of plant and fungal community structure across western Amazonian rainforests

Kabir G Peay, Christopher Baraloto and Paul VA Fine

ISME J 2013 7: 1852-1861; advance online publication, April 18, 2013; 10.1038/ismej.2013.66

Abstract | Full Text

GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES

High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman

Raeid M M Abed, Phyllis Lam, Dirk de Beer and Peter Stief

ISME J 2013 7: 1862-1875; advance online publication, April 11, 2013; 10.1038/ismej.2013.55

Abstract | Full Text

Corrigenda

Top

Global marine bacterial diversity peaks at high latitudes in winter

Joshua Ladau, Thomas J Sharpton, Mariel M Finucane, Guillaume Jospin, Steven W Kembel, James O'Dwyer, Alexander F Koeppel, Jessica L Green and Katherine S Pollard

ISME J 2013 7: 1876; 10.1038/ismej.2013.76

Full Text

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

Libusha Kelly, Huiming Ding, Katherine H Huang, Marcia S Osburne and Sallie W Chisholm

ISME J 2013 7: 1876; 10.1038/ismej.2013.92

Full Text

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