Friday, 30 August 2013

EMBO Reports - Table of Contents alert Volume 14 Issue 9, pp 749-845


TABLE OF CONTENTS

September 2013 | Volume 14, Issue 9

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Science & Society
Scientific Reports

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Upfront

Top

Editorial

Yes we can, but do we?

Science in Western countries is increasingly dominated by recruits from other parts of the world. Howy considers the reasons for this and whether anything could or should be done to halt this trend.

Howy Jacobs

EMBO reports (2013), 14, 749; 10.1038/embor.2013.123

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Published online: 30 August 2013

Subject Categories: Societal Issues & Politics

Opinion

Sirtuins and ageing—new findings

Sirtuins are a promising avenue for orally administered drugs that might deliver the anti-aging benefits normally provided by calorie restriction.

Leonard Guarente

EMBO reports (2013), 14, 750; 10.1038/embor.2013.121

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Published online: 09 August 2013

Subject Categories: Cellular Metabolism

Hot off the Press

RNA sensing: the more RIG-I the merrier?

RIG-I is an RNA helicase with important roles in immunity to RNA viruses. Two studies in this issue of EMBO reports provide new insights into the role of ATP hydrolysis by the helicase domain and RIG-I oligomerization.

Jan Rehwinkel

EMBO reports (2013), 14, 751 - 752; 10.1038/embor.2013.120

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Published online: 06 August 2013

Subject Categories: RNA | Microbiology & Pathogens

Correspondence

One bacterial effector with two distinct catalytic activities by different strains

Christopher T D Price and Yousef Abu Kwaik

EMBO reports (2013), 14, 753 - 754; 10.1038/embor.2013.126

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Published online: 16 August 2013

Subject Categories: Microbiology & Pathogens | Chromatin & Transcription

Science & Society

Top

Body, heal thyself

Kenneth Chien, Professor of Cardiovascular Research at Karolinska Institutet in Sweden talks about regenerative medicine and using the body's own healing potential versus stem cell-based therapies.

EMBO reports (2013), 14, 755 - 758; 10.1038/embor.2013.115

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Published online: 13 August 2013

Subject Categories: Health & Disease

The responsibility of the scientist

Do scientists bear the responsibility for how their research is used? What can we learn from wartime and more recent examples of how scientists have handled dual-use problems of research?

Peter Herrlich

EMBO reports (2013), 14, 759 - 764; 10.1038/embor.2013.116

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Published online: 13 August 2013

Subject Categories: Science Policy & Funding | Philosophy & History of Science

Our sense of self

The genetic and molecular causes of schizophrenia have remained elusive despite intensive research. The philosophical discipline of phenomenology might now point neuroscience in a new direction.

Katrin Weigmann

EMBO reports (2013), 14, 765 - 768; 10.1038/embor.2013.124

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Published online: 13 August 2013

Subject Categories: Health & Disease

A late spring in Europe and the adaptability of plants

Plants seem to cope with unexpected climate conditions and retain a memory of past climates by epigenetic reprogramming. A better understanding of these mechanisms could allow breeders to create new crop varieties adapted to harsher conditions.

Philip Hunter

EMBO reports (2013), 14, 769 - 771; 10.1038/embor.2013.122

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Published online: 13 August 2013

Subject Categories: Evolution, Environment & Agriculture

Scientific Reports

Top

Defining the functional determinants for RNA surveillance by RIG-I  EMBO Open

This study shows that HEL2i-domain mediated scanning allows RIG-I to sense the length of RNA targets, and a short RNA duplex that binds one RIG-I molecule can stimulate ATPase activity and interferon response.

Andrew Kohlway, Dahai Luo, David C Rawling, Steve C Ding and Anna Marie Pyle

EMBO reports (2013), 14, 772 - 779; 10.1038/embor.2013.108

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 30 July 2013

Subject Categories: RNA | Immunology | Structural Biology

ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon

This study shows that RIG-I oligomerizes on Sendai virus-derived RNA in an ATP hydrolysis and dsRNA length dependent manner. Oligomerization correlates with the strength of interferon activation, thus identifying the role of the elusive RIG-I ATPase activity.

Jenish R Patel, Ankur Jain, Yi-ying Chou, Alina Baum, Taekjip Ha and Adolfo García-Sastre

EMBO reports (2013), 14, 780 - 787; 10.1038/embor.2013.102

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 12 July 2013

Subject Categories: Immunology | Microbiology & Pathogens | RNA

Casein kinase 2 is essential for mitophagy

Atg32 is the yeast mitophagy receptor for mitophagy, a process that selectively degrades mitochondria. Here, CK2 is shown to phosphorylate Atg32 and be essential for Atg32-Atg11 interaction and ensuing mitophagy.

Tomotake Kanki, Yusuke Kurihara, Xiulian Jin, Tadahiro Goda, Yusuke Ono, Masamune Aihara, Yuko Hirota, Tetsu Saigusa, Yoshimasa Aoki, Takeshi Uchiumi and Dongchon Kang

EMBO reports (2013), 14, 788 - 794; 10.1038/embor.2013.114

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 30 July 2013

Subject Categories: Signal Transduction | Proteins

Autophagy in Myf5+ progenitors regulates energy and glucose homeostasis through control of brown fat and skeletal muscle development  EMBO Open

Atg7 deletion in Myf5+ progenitors blocks autophagy in brown adipose tissue and muscle, affecting their differentiation and function. Knockout mice have higher body temperatures and glucose intolerance, underscoring the importance of autophagy in these processes.

Nuria Martinez-Lopez, Diana Athonvarangkul, Srabani Sahu, Luisa Coletto, Haihong Zong, Claire C Bastie, Jeffrey E Pessin, Gary J Schwartz and Rajat Singh

EMBO reports (2013), 14, 795 - 803; 10.1038/embor.2013.111

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 02 August 2013

Subject Categories: Cellular Metabolism | Development

Structural insights into substrate recognition in proton-dependent oligopeptide transporters

The structure of the bacterial proton dependent oligopeptide transporter PepTSo2 is presented in the inward open conformation in complex with the peptidomimetic alafosfalin. The ligand binding sites defined by this study are highly conserved and the structural insights presented here are therefore likely to also apply to human POTs.

Fatma Guettou, Esben M Quistgaard, Lionel Trésaugues, Per Moberg, Caroline Jegerschöld, Lin Zhu, Agnes Jin Oi Jong, Pär Nordlund and Christian Löw

EMBO reports (2013), 14, 804 - 810; 10.1038/embor.2013.107

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 19 July 2013

Subject Categories: Membranes & Transport | Structural Biology

The ribosome triggers the stringent response by RelA via a highly distorted tRNA

The bacterial stringent response is initiated by RelA and links nutrient starvation with the transcriptional control of genes. Cryo-EM now shows that RelA on the ribosome stabilizes an unusual distorted form of cognate, deacylated tRNA.

Xabier Agirrezabala, Israel S Fernández, Ann C Kelley, David Gil Cartón, Venki Ramakrishnan and Mikel Valle

EMBO reports (2013), 14, 811 - 816; 10.1038/embor.2013.106

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 23 July 2013

Subject Categories: Structural Biology | RNA | Proteins

ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis

In plants, SOG1 regulates transcription, cell cycle arrest and cell death in response to DNA damage. This study reports that ATM-mediated phosphorylation of SOG1 is essential for this response. As SOG1 and p53 have no sequence similarity, they are likely an example of convergent evolution.

Kaoru O Yoshiyama, Junya Kobayashi, Nobuo Ogita, Minako Ueda, Seisuke Kimura, Hisaji Maki and Masaaki Umeda

EMBO reports (2013), 14, 817 - 822; 10.1038/embor.2013.112

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 02 August 2013

Subject Categories: Genome Stability & Dynamics | Plant Biology

Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis

The authors of this study observe parent-of-origin effects regulating retrotransposition in Arabidopsis characterized by expansion and suppression in the paternal and maternal germ line, respectively. The parent-of-origin effect was still observed when gametophytes carried mutations for key epigenetic regulators indicating that the suppressive regulation occurs in the maternal sporophytic tissues.

Jon Reinders, Marie Mirouze, Joël Nicolet and Jerzy Paszkowski

EMBO reports (2013), 14, 823 - 828; 10.1038/embor.2013.95

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 09 July 2013

Subject Categories: Genome Stability & Dynamics | Plant Biology

Aurora A kinase and its substrate TACC3 are required for central spindle assembly

This study shows that Aurora A-in addition to its role metaphase bipolar spindle assembly-is required for the generation of a robust anaphase central spindle. Aurora A substrate TACC3 participates in this process.

Antonios Lioutas and Isabelle Vernos

EMBO reports (2013), 14, 829 - 836; 10.1038/embor.2013.109

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 26 July 2013

Subject Categories: Cell Cycle | Cell & Tissue Architecture

Interaction of smoothened with integrin-linked kinase in primary cilia mediates Hedgehog signalling

The protein kinase ILK promotes the movement of Smoothened into the mouse primary cilium and is required for the induction of Gli transcription factors in response to Sonic Hedgehog.

Badia Barakat, Liang Yu, Camden Lo, Duc Vu, Elisabetta De Luca, Jason E Cain, Luciano G Martellotto, Shoukat Dedhar, Anthony J Sadler, Die Wang, D Neil Watkins and Gregory E Hannigan

EMBO reports (2013), 14, 837 - 844; 10.1038/embor.2013.110

Abstract | Full text | PDF | Supp. info. | Review Process File

Published online: 23 July 2013

Subject Categories: Signal Transduction

Corrections

Top

Corrigendum

The puzzle of TRPV4 channelopathies

Bernd Nilius and Thomas Voets

EMBO reports (2013), 14, 845; 10.1038/embor.2013.134

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Published online: 20 August 2013

Corrigenda

The chromatin remodelling complex NoRC safeguards genome stability by heterochromatin formation at telomeres and centromeres

Anna Postepska-Igielska, Damir Krunic, Nina Schmitt, Karin M Greulich-Bode, Petra Boukamp and Ingrid Grummt

EMBO reports (2013), 14, 845; 10.1038/embor.2013.135

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Published online: 20 August 2013

Wnk kinases are positive regulators of canonical Wnt/β-catenin signalling

Ekatherina Serysheva, Hebist Berhane, Luca Grumolato, Kubilay Demir, Sophie Balmer, Maxime Bodak, Michael Boutros, Stuart Aaronson, Marek Mlodzik and Andreas Jenny

EMBO reports (2013), 14, 845; 10.1038/embor.2013.136

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Published online: 20 August 2013

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