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| | | Specials - Outlook: Agriculture and drought | | | | Climate change means more frequent episodes of severe drought with potentially devastating effects on the world's ability to feed a growing population. We need to improve agricultural practice to make the most efficient use of water and reduces the intensity of fertilizers and pesticides. ▼ more | | | | | | | | | Heat-pipe Earth | The Hadean era of Earth's history, around four billion years ago, is the dark age of geology, illuminated by occasional scraps of data. William Moore and Alexander Webb throw new light onto this period using a geodynamical model developed to explain events on Jupiter's volcanically active moon Io. They propose a 'heat-pipe' model to account for heat transport and lithospheric dynamics of an early Earth in transition between the early magma ocean and the era of plate tectonics. | | | | | | | | | Carbon nanotube computer | Carbon nanotubes have long been touted as promising building blocks for computers based on carbon rather than silicon. Max Shulaker et al. now reach a true milestone in the fields of carbon electronics and nanoelectronics with the construction of a simple but functional computer made entirely from carbon nanotube transistors. Composed of 178 transistors, each containing between 10 and 200 carbon nanotubes, it runs a simple operating system and is capable of multitasking. | | | | | | | | | | | Frontiers research network enables you make the most of your valuable professional network through our unique platform. Connect to colleagues, increase your impact and benefit from a 30% increase in downloads to any publication you link to your profile.
Over 100,000 researchers are already here - We are just waiting for you: Register today | | | | | | | | | | | Integrating abundance and functional traits reveals new global hotspots of fish diversity | Traditional measures of biodiversity record species richness across different areas: they just count the number of species. This ignores the fact that different species have different abundances, or that the range of functional traits present in a community is not dependent solely on the number of species. This study presents a new measure of functional diversity, incorporating species abundances and functional traits into a global census of a vertebrate group – 2,473 marine reef fish species – at 1,844 sites. The results reveal previously unknown diversity hotspots in temperate regions and in the tropical Eastern Pacific. | | | | | | | | | | In this week's podcast: a computer built from carbon nanotubes, what the Earth looked like before tectonic plates, and should we tweak genes to save species from extinction? | | | | | | |
| | | | | | | | | | | | | | | | | Counting the cost ▶ | | | As more and more of its ocean-sciences budget is eaten up by operational and maintenance costs, the US National Science Foundation should learn to take a long view when investing in major projects. | | | | | | | | Time for change ▶ | | | Angela Merkel needs to tackle the issue of Germany's uneven university funding. | | | | | | | | Homes for bones ▶ | | | A dispute over the skull of an Italian cheese thief highlights the enduring debate over repatriation. | | | | | | | | | | | | | | | | | Seven days: 20–26 September 2013 ▶ | | | The week in science: Nobel-prizewinning neuroscientist dies, jailed Iranian physics student wins human-rights prize, and Russian Academy of Sciences moves towards major overhaul. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Biotechnology: The start-up engine ▶ | | | Third Rock Ventures made its name by placing big bets on the biotechnology companies it launched. Now, everyone is waiting for the pay-off. | | | | | | | | | | | | | | Innovation: Bridging the market gap ▶ | | | Physicists and engineers must do more than peddle ideas if their technologies are to translate effectively beyond the lab, says Hans Zappe. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Single-cell Hi-C reveals cell-to-cell variability in chromosome structure ▶ | | | Takashi Nagano, Yaniv Lubling, Tim J. Stevens et al. | | | A novel genomic technique, single-cell Hi-C, detects thousands of simultaneous chromatin contacts in a single cell; this is used to show that individual chromosomes maintain domain organization at the megabase scale, but that chromosome structures vary from cell to cell at larger scales. | | | | | | | | A Silurian placoderm with osteichthyan-like marginal jaw bones ▶ | | | Min Zhu, Xiaobo Yu, Per Erik Ahlberg et al. | | | Although the origin of jaws is one of the key episodes in the evolution of vertebrates, the jaw bones of modern bony fishes and limbed vertebrates differ so much from those in any other groups that the individual evolutionary steps in the transition are still unknown; here Entelognathus is described, an early placoderm fish with full body armour, but with marginal jaw bones similar to those of modern bony fishes and limbed vertebrates. | | | | | | | | Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition ▶ | | | Miler T. Lee, Ashley R. Bonneau, Carter M. Takacs et al. | | | This study investigates how zygotic transcription is initiated and the maternal transcripts cleared in the zebrafish embryo: using loss-of-function analyses, high-throughput transcriptome sequencing and ribosome footprinting, the important roles of pluripotency factors Nanog, Pou5f1 and SoxB1 during these processes are identified. | | | | | | | | Hidden specificity in an apparently nonspecific RNA-binding protein ▶ | | | Ulf-Peter Guenther, Lindsay E. Yandek, Courtney N. Niland et al. | | | A novel high-throughput sequencing kinetics approach is used to measure functional binding of the apparently nonspecific RNA-binding protein C5 to all possible sequence variants in its substrate binding site; C5 binds different substrate variants with affinities varying widely, and with a similar affinity distribution to that of highly specific nucleic-acid-binding proteins, but it does not bind its physiological RNA targets with the highest affinity. | | | | | | | | | | | | | | Temperature triggers immune evasion by Neisseria meningitidis ▶ | | | Edmund Loh, Elisabeth Kugelberg, Alexander Tracy et al. | | | Three Neisseria meningitidis RNA thermosensors important for resistance against complement-mediated immune killing are identified, located in the 5′ untranslated regions of genes necessary for capsule biosynthesis, expression of factor H binding protein and sialyation of lipolysaccharide; increased temperature may act as a warning signal for the bacterium, prompting it to enhance mechanisms of immune evasion. | | | | | | | | Temperature-dependent regulation of flowering by antagonistic FLM variants ▶ | | | David Posé, Leonie Verhage, Felix Ott et al. | | | Temperature-dependent alternative splicing of FLOWERING LOCUS M (FLM) results in two protein products, FLM-β and FLM-δ, that regulate the onset of flowering in Arabidopsis; at cooler temperatures FLM-β represses flowering, whereas at higher temperatures, the plant preferentially produces FLM-δ, which promotes flowering. | | | | | | | | Directional tissue migration through a self-generated chemokine gradient ▶ | | | Erika Donà, Joseph D. Barry, Guillaume Valentin et al. | | | It is widely accepted that migrating cells and tissues navigate along pre-patterned chemoattractant gradients; here it is shown that migrating tissues can also determine their own direction by generating local gradients of chemokine activity, via polarized receptor-mediated internalization, that are sufficient to ensure robust collective migration. | | | | | | | | | | | Transcriptome and genome sequencing uncovers functional variation in humans ▶ | | | Tuuli Lappalainen, Michael Sammeth, Marc R. Friedländer et al. | | | Sequencing and deep analysis of mRNA and miRNA from lymphoblastoid cell lines of 462 individuals from the 1000 Genomes Project reveal widespread genetic variation affecting the regulation of most genes, with transcript structure and expression level variation being equally common but genetically largely independent, and the analyses point to putative causal variants for dozens of disease-associated loci. | | | | | | | | The ubiquitin ligase parkin mediates resistance to intracellular pathogens ▶ | | | Paolo S. Manzanillo, Janelle S. Ayres, Robert O. Watson et al. | | | Mutations in the ubiquitin ligase parkin are associated with increased susceptibility to Parkinson's disease; parkin is already known to have a role in mitophagy and this work identifies a new innate immunity role for parkin in ubiquitin-mediated autophagy of intracellular bacterial pathogens. | | | | | | | | Integrating abundance and functional traits reveals new global hotspots of fish diversity ▶ | | | Rick D. Stuart-Smith, Amanda E. Bates, Jonathan S. Lefcheck et al. | | | Global reef fish diversity is studied with metrics incorporating species abundances and functional traits; these identify diversity hotspots corresponding to the diversity of functional traits amongst individuals in the community, and greater evenness in the abundance of reef fishes at higher latitudes, findings that contrast with patterns reported previously using traditional richness-based methods. | | | | | | | | A disinhibitory microcircuit initiates critical-period plasticity in the visual cortex ▶ | | | Sandra J. Kuhlman, Nicholas D. Olivas, Elaine Tring et al. | | | The role of parvalbumin (PV)-positive interneurons in ocular dominance plasticity (ODP) has been a point of contention; here PV-positive cells are shown to initiate competitive periods of plasticity during the critical periods of eye development when ODP occurs, and transient reductions in inhibitory firing from PV-positive cells provides a return to normal firing rates in excitatory neurons, a key step in ODP progression. | | | | | | | | The BC component of ABC toxins is an RHS-repeat-containing protein encapsulation device ▶ | | | Jason N. Busby, Santosh Panjikar, Michael J. Landsberg et al. | | | The crystal structure of the complex formed by the B and C toxin complex proteins is reported, revealing how toxin complexes are processed and protected; the proteins assemble to form a large hollow structure that sequesters the cytotoxic portion of the C protein, and a β-propeller domain mediates attachment to the A protein in the native ABC complex. | | | | | | | | Characterization of H7N9 influenza A viruses isolated from humans ▶ | | | Tokiko Watanabe, Maki Kiso, Satoshi Fukuyama et al. | | | Here, biological attributes of two early human isolates of the newly emerged H7N9 influenza viruses are characterized: the potential of these viruses to infect and/or transmit within various animal models is discussed, as is their relative sensitivity to neuraminidase inhibitors and experimental polymerase inhibitors compared to an H1N1 pandemic strain. | | | | | | | | Pathogenesis and transmission of avian influenza A (H7N9) virus in ferrets and mice ▶ | | | Jessica A. Belser, Kortney M. Gustin, Melissa B. Pearce et al. | | | The new H7N9 influenza virus, recently emerged in China, can replicate in human airway cells and in the respiratory tract of ferrets to a higher level than can seasonal H3N2 virus and shows higher lethality in mice than genetically related H7N9 and H9N2 viruses, but shows limited transmission in ferrets by respiratory droplets. | | | | | | | | Limited airborne transmission of H7N9 influenza A virus between ferrets ▶ | | | Mathilde Richard, Eefje J. A. Schrauwen, Miranda de Graaf et al. | | | An investigation into the transmissibility of the H7N9 influenza A virus in ferrets finds that although the virus has some determinants associated with human adaptation and transmissibility between mammals, the airborne transmission between ferrets is limited. | | | | | | | | Wapl is an essential regulator of chromatin structure and chromosome segregation ▶ | | | Antonio Tedeschi, Gordana Wutz, Sébastien Huet et al. | | | Depletion of the cohesin-associated protein Wapl in mice is shown to increase the residence time of cohesin on DNA, which leads to clustering of cohesin in axial structures, and causes chromatin condensation in interphase chromosomes; the findings suggest that cohesin could have an architectural role in interphase chromosome organization. | | | | | | | | Two replication fork maintenance pathways fuse inverted repeats to rearrange chromosomes ▶ | | | Lingchuan Hu, Tae Moon Kim, Mi Young Son et al. | | | Stalling of replication forks in sequences that have non-allelic repeats can lead to genomic rearrangements; here two pathways consistent with homologous recombination and error-free post-replication repair fuse identical and mismatched repeats, respectively, thus inducing chromosomal rearrangements in mouse embryonic stem cells. | | | | | | | | A two-domain elevator mechanism for sodium/proton antiport ▶ | | | Chiara Lee, Hae Joo Kang, Christoph von Ballmoos et al. | | | The X-ray crystal structure of NapA, a Na+/H+ antiporter from Thermus thermophilus, in an active, outward-facing state is reported; comparisons to the structure of a related transporter in a low pH/inactivated, inward-facing state show the conformational changes that occur when the membrane protein moves from an inward-facing to an outward-facing state, suggesting that Na+/H+ antiporters operate by a two-domain rocking bundle model. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | Nature Geoscience Insight: Marine cycles in flux In this Nature Geoscience Insight we highlight some of the most intriguing advances in the microbial biogeochemistry of the oceans, a field that is very much in flux. Produced with support from: | | | | | |
| | | | | | | | | | | | | | | | Alkane desaturation by concerted double hydrogen atom transfer to benzyne ▶ | | | Dawen Niu, Patrick H. Willoughby, Brian P. Woods et al. | | | Benzynes are capable of concerted removal of two vicinal hydrogen atoms from a hydrocarbon, a discovery enabled by the thermal generation of reactive benzyne intermediates through the hexadehydro-Diels–Alder cycloisomerization reaction of triyne substrates. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Attractive photons in a quantum nonlinear medium ▶ | | | Ofer Firstenberg, Thibault Peyronel, Qi-Yu Liang et al. | | | By coupling light to strongly interacting atomic Rydberg states in a dispersive regime, it is possible to induce individual photons to travel as massive particles with strong mutual attraction, such that the propagation of photon pairs is dominated by a two-photon bound state. | | | | | | | | Microscopic observation of magnon bound states and their dynamics ▶ | | | Takeshi Fukuhara, Peter Schauß, Manuel Endres et al. | | | Bound states of elementary spin waves (magnons) have been predicted to occur in one-dimensional quantum magnets; the observation of two-magnon bound states in a system of ultracold bosonic atoms in an optical lattice is now reported. | | | | | | | | | | | Swings between rotation and accretion power in a binary millisecond pulsar ▶ | | | A. Papitto, C. Ferrigno, E. Bozzo et al. | | | A neutron star with a low mass companion star was observed at different times as a millisecond pulsar powered either by the rotation of its magnetic field or by the accretion of mass, demonstrating the evolutionary link between these two classes of pulsars, and probing the short timescales on which the transitions between the two states may occur. | | | | | | | | | | | Carbon nanotube computer ▶ | | | Max M. Shulaker, Gage Hills, Nishant Patil et al. | | | A computer built entirely using transistors based on carbon nanotubes, which is capable of multitasking and emulating instructions from the MIPS instruction set, is enabled by methods that overcome inherent challenges with this new technology. | | | | | | | | Alkane desaturation by concerted double hydrogen atom transfer to benzyne ▶ | | | Dawen Niu, Patrick H. Willoughby, Brian P. Woods et al. | | | Benzynes are capable of concerted removal of two vicinal hydrogen atoms from a hydrocarbon, a discovery enabled by the thermal generation of reactive benzyne intermediates through the hexadehydro-Diels–Alder cycloisomerization reaction of triyne substrates. | | | | | | | | | | | | | | | | | | | | Brief Communications Arising | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Heat-pipe Earth ▶ | | | William B. Moore, A. Alexander G. Webb | | | A heat-pipe model of Earth, whereby interior heat is brought to the surface through localized channels, yields predictions that agree with craton data and the detrital zircon record, and offers a global geodynamic framework in which to explore Earth's evolution before the onset of plate tectonics. | | | | | | | | Atmospheric oxygenation three billion years ago ▶ | | | Sean A. Crowe, Lasse N. Døssing, Nicolas J. Beukes et al. | | | The distribution of chromium isotopes and redox-sensitive metals in the Nsuze palaeosol and in the Ijzermyn iron formation from the Pongola Supergroup, in South Africa, suggests that there were appreciable levels of atmospheric oxygen about three billion years ago, some 300–400 million years earlier than previous indications for Earth surface oxygenation. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The dry facts ▶ | | | Drought has wreaked havoc throughout history, destroying crops and causing famine and conflict. And it could be getting worse. | | | | | | | | | | | | | | Modelling: Predictive yield ▶ | | | Farmers would benefit from better long-range weather forecasts. What else can science provide to help them decide what to plant? | | | | | | | | | | | Crop pests: Under attack ▶ | | | The threat of insects to agriculture is set to increase as the planet warms. What action can we take to safeguard our crops? | | | | | | | | | | | | | | |
| | | LEARNING IN THE DIGITAL AGE
Nature and Scientific American collaborate to probe the revolution underway in education and discuss what it means for learning, teaching and research. Access the Special online or via specials in the NatureJournals app | | | | | |
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